Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V A all() (bsb_hdf5.FileStore method) (bsb_hdf5.morphology_repository.MorphologyRepository method) (bsb_hdf5.MorphologyRepository method) append() (bsb_hdf5.chunks.ChunkedCollection method) (bsb_hdf5.chunks.ChunkedProperty method) (bsb_hdf5.resource.Resource method) append_additional() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) append_data() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) append_entities() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) attributes (bsb_hdf5.resource.Resource property) B bsb_hdf5 module bsb_hdf5.chunks module bsb_hdf5.connectivity_set module bsb_hdf5.file_store module bsb_hdf5.morphology_repository module bsb_hdf5.placement_set module bsb_hdf5.resource module C chunk_connect() (bsb_hdf5.connectivity_set.ConnectivitySet method) (bsb_hdf5.ConnectivitySet method) chunk_context() (bsb_hdf5.chunks.ChunkLoader method) ChunkedCollection (class in bsb_hdf5.chunks) ChunkedProperty (class in bsb_hdf5.chunks) ChunkLoader (class in bsb_hdf5.chunks) clear() (bsb_hdf5.chunks.ChunkedCollection method) (bsb_hdf5.chunks.ChunkedProperty method) (bsb_hdf5.connectivity_set.ConnectivitySet method) (bsb_hdf5.ConnectivitySet method) (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) clear_chunk_filter() (bsb_hdf5.chunks.ChunkLoader method) clear_connectivity() (bsb_hdf5.HDF5Engine method) clear_placement() (bsb_hdf5.HDF5Engine method) connect() (bsb_hdf5.connectivity_set.ConnectivitySet method) (bsb_hdf5.ConnectivitySet method) ConnectivitySet (class in bsb_hdf5) (class in bsb_hdf5.connectivity_set) convert_to_local() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) copy() (bsb_hdf5.HDF5Engine method) create() (bsb_hdf5.connectivity_set.ConnectivitySet class method) (bsb_hdf5.ConnectivitySet class method) (bsb_hdf5.HDF5Engine method) (bsb_hdf5.placement_set.PlacementSet class method) (bsb_hdf5.PlacementSet class method) (bsb_hdf5.resource.Resource method) CSIterator (class in bsb_hdf5.connectivity_set) D default() (bsb_hdf5.morphology_repository.MetaEncoder method) E encode_labels() (in module bsb_hdf5.placement_set) exclude_chunk() (bsb_hdf5.chunks.ChunkLoader method) exists() (bsb_hdf5.connectivity_set.ConnectivitySet static method) (bsb_hdf5.ConnectivitySet static method) (bsb_hdf5.HDF5Engine method) (bsb_hdf5.placement_set.PlacementSet static method) (bsb_hdf5.PlacementSet static method) (bsb_hdf5.resource.Resource method) F FileStore (class in bsb_hdf5) flat_iter_connections() (bsb_hdf5.connectivity_set.ConnectivitySet method) (bsb_hdf5.ConnectivitySet method) G get_all_chunks() (bsb_hdf5.chunks.ChunkLoader method) get_all_meta() (bsb_hdf5.morphology_repository.MorphologyRepository method) (bsb_hdf5.MorphologyRepository method) get_attribute() (bsb_hdf5.resource.Resource method) get_chunk_path() (bsb_hdf5.chunks.ChunkLoader method) get_chunk_reader() (bsb_hdf5.chunks.ChunkedProperty method) get_chunk_stats() (bsb_hdf5.connectivity_set.ConnectivitySet method) (bsb_hdf5.ConnectivitySet method) (bsb_hdf5.HDF5Engine method) (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) get_dataset() (bsb_hdf5.resource.Resource method) get_dir_iter() (in module bsb_hdf5.connectivity_set) get_encoding() (bsb_hdf5.FileStore method) get_global_chunks() (bsb_hdf5.connectivity_set.ConnectivitySet method) (bsb_hdf5.ConnectivitySet method) get_global_iter() (bsb_hdf5.connectivity_set.CSIterator method) get_label_mask() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) get_labelled() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) get_loaded_chunks() (bsb_hdf5.chunks.ChunkLoader method) get_local_chunks() (bsb_hdf5.connectivity_set.ConnectivitySet method) (bsb_hdf5.ConnectivitySet method) get_local_iter() (bsb_hdf5.connectivity_set.CSIterator method) get_meta() (bsb_hdf5.FileStore method) (bsb_hdf5.morphology_repository.MorphologyRepository method) (bsb_hdf5.MorphologyRepository method) get_mtime() (bsb_hdf5.FileStore method) get_node_name() (bsb_hdf5.StorageNode method) get_tags() (bsb_hdf5.connectivity_set.ConnectivitySet class method) (bsb_hdf5.ConnectivitySet class method) get_unique_labels() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) H handles_class_handles() (in module bsb_hdf5.resource) handles_handles() (in module bsb_hdf5.resource) handles_static_handles() (in module bsb_hdf5.resource) has() (bsb_hdf5.FileStore method) (bsb_hdf5.morphology_repository.MorphologyRepository method) (bsb_hdf5.MorphologyRepository method) HDF5Engine (class in bsb_hdf5) HDF5SlowLockingWarning I include_chunk() (bsb_hdf5.chunks.ChunkLoader method) K keys() (bsb_hdf5.chunks.ChunkedCollection method) (bsb_hdf5.resource.Resource method) L label() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) label_by_mask() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) load() (bsb_hdf5.chunks.ChunkedCollection method) (bsb_hdf5.chunks.ChunkedProperty method) (bsb_hdf5.FileStore method) (bsb_hdf5.morphology_repository.MorphologyRepository method) (bsb_hdf5.MorphologyRepository method) load_active_config() (bsb_hdf5.FileStore method) load_additional() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) load_all() (bsb_hdf5.chunks.ChunkedCollection method) load_block_connections() (bsb_hdf5.connectivity_set.ConnectivitySet method) (bsb_hdf5.ConnectivitySet method) load_ids() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) load_local_connections() (bsb_hdf5.connectivity_set.ConnectivitySet method) (bsb_hdf5.ConnectivitySet method) load_morphologies() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) load_positions() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) load_rotations() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) LocationOutOfBoundsError M meta_object_hook() (in module bsb_hdf5.morphology_repository) MetaEncoder (class in bsb_hdf5.morphology_repository) module bsb_hdf5 bsb_hdf5.chunks bsb_hdf5.connectivity_set bsb_hdf5.file_store bsb_hdf5.morphology_repository bsb_hdf5.placement_set bsb_hdf5.resource MorphologyRepository (class in bsb_hdf5) (class in bsb_hdf5.morphology_repository) move() (bsb_hdf5.HDF5Engine method) N nested_iter_connections() (bsb_hdf5.connectivity_set.ConnectivitySet method) (bsb_hdf5.ConnectivitySet method) O overwrite() (bsb_hdf5.chunks.ChunkedCollection method) (bsb_hdf5.chunks.ChunkedProperty method) P PlacementSet (class in bsb_hdf5) (class in bsb_hdf5.placement_set) post_type (bsb_hdf5.connectivity_set.ConnectivitySet attribute) (bsb_hdf5.ConnectivitySet attribute) post_type_name (bsb_hdf5.ConnectivitySet attribute) pre_type (bsb_hdf5.connectivity_set.ConnectivitySet attribute) (bsb_hdf5.ConnectivitySet attribute) pre_type_name (bsb_hdf5.ConnectivitySet attribute) preload() (bsb_hdf5.morphology_repository.MorphologyRepository method) (bsb_hdf5.MorphologyRepository method) R recognizes() (bsb_hdf5.HDF5Engine static method) remove() (bsb_hdf5.FileStore method) (bsb_hdf5.HDF5Engine method) (bsb_hdf5.morphology_repository.MorphologyRepository method) (bsb_hdf5.MorphologyRepository method) (bsb_hdf5.resource.Resource method) remove_labels() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) remove_labels_by_mask() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) require() (bsb_hdf5.connectivity_set.ConnectivitySet class method) (bsb_hdf5.ConnectivitySet class method) (bsb_hdf5.placement_set.PlacementSet class method) (bsb_hdf5.PlacementSet class method) (bsb_hdf5.resource.Resource method) require_chunk() (bsb_hdf5.chunks.ChunkLoader method) require_placement_set() (bsb_hdf5.HDF5Engine method) Resource (class in bsb_hdf5.resource) root (bsb_hdf5.StorageNode attribute) root_slug (bsb_hdf5.HDF5Engine property) S save() (bsb_hdf5.morphology_repository.MorphologyRepository method) (bsb_hdf5.MorphologyRepository method) select() (bsb_hdf5.morphology_repository.MorphologyRepository method) (bsb_hdf5.MorphologyRepository method) set_all_meta() (bsb_hdf5.morphology_repository.MorphologyRepository method) (bsb_hdf5.MorphologyRepository method) set_chunk_filter() (bsb_hdf5.chunks.ChunkLoader method) set_morphology_label_filter() (bsb_hdf5.placement_set.PlacementSet method) (bsb_hdf5.PlacementSet method) shape (bsb_hdf5.resource.Resource property) StorageNode (class in bsb_hdf5) store() (bsb_hdf5.FileStore method) store_active_config() (bsb_hdf5.FileStore method) T tag (bsb_hdf5.ConnectivitySet attribute) U unmap() (bsb_hdf5.resource.Resource method) unmap_one() (bsb_hdf5.resource.Resource method) update_all_meta() (bsb_hdf5.morphology_repository.MorphologyRepository method) (bsb_hdf5.MorphologyRepository method) V versions() (bsb_hdf5.HDF5Engine method)